tripso
Getting Started
Installation
Tutorials
Data Preparation
Gene Program Database Creation
Cell Tokenization
Train Base and Global Models
Model Evaluation and Gene Program Importance Analysis
Visualizing Gene Program Embeddings
Calculating Gene Program (GP) Importance Scores
Generating GP Gene Cosine Similarity
Analyzing Gene-to-GP Cosine Similarity
Extracting novel gene programs
Visualizing Novel Gene Programs Discovered by GPFinder
Contributing
Building the documentation
Python API
tripso package
tripso
Index
Index
E
|
G
|
M
|
P
|
T
|
V
E
evaluate_supervised_model() (tripso.gpEval method)
G
generate_attention_matrix() (tripso.gpEval method)
generate_embeddings() (tripso.gpEval method)
generate_gene_embeddings() (tripso.gpEval method)
gpEval (class in tripso)
M
module
tripso
P
pp_and_tokenize() (in module tripso)
T
train() (in module tripso)
tripso
module
V
visualize() (tripso.gpEval method)
visualize_gene_embeddings() (tripso.gpEval method)