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Getting Started

  • Installation

Tutorials

  • Data Preparation
  • Gene Program Database Creation
  • Cell Tokenization
  • Train Base and Global Models
  • Model Evaluation and Gene Program Importance Analysis
  • Visualizing Gene Program Embeddings
  • Calculating Gene Program (GP) Importance Scores
  • Generating GP Gene Cosine Similarity
  • Analyzing Gene-to-GP Cosine Similarity
  • Extracting novel gene programs
  • Visualizing Novel Gene Programs Discovered by GPFinder

Contributing

  • Building the documentation

Python API

  • tripso package
tripso
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